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Pig >> mail # user >> Pig cannot resolve BamUDFLoader


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Mehmet Belgin 2013-04-22, 21:06
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j.barrett Strausser 2013-04-22, 21:20
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Mehmet Belgin 2013-04-22, 21:54
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Re: Pig cannot resolve BamUDFLoader
Glad it worked.

-b
On Mon, Apr 22, 2013 at 5:54 PM, Mehmet Belgin <[EMAIL PROTECTED]
> wrote:

> Oh, I assumed  that seqpig was a part of pig.
>
> Replacing the "pig" with "seqpig" did the trick. Looks like the args are
> identical to those of the pig.
>
> Thank you for your responses!
>
> -Mehmet
>
>
>
> On Apr 22, 2013, at 5:20 PM, j.barrett Strausser wrote:
>
> > Looks like that loader is related to and available from :
> > http://seqpig.sourceforge.net/
> >
> > I don't believe the BamUdfLoader is native to pig.
> >
> > -b
> >
> >
> > On Mon, Apr 22, 2013 at 5:06 PM, Mehmet Belgin <
> [EMAIL PROTECTED]
> >> wrote:
> >
> >> Hi Everyone,
> >>
> >> I have absolutely no experience with Pig and limited experience with
> >> hadoop, so please bear with me. We built a small hadoop cluster for
> >> experimental purposes and installed pig with all listed dependencies. I
> >> made sure that all of the jars are in CLASSPATH and env variables are
> >> defined as docuemtned, but still getting the following error:
> >>
> >> 2013-04-22 16:50:08,770 [main] ERROR org.apache.pig.tools.grunt.Grunt -
> >> ERROR 1070: Could not resolve BamUDFLoader using imports: [,
> >> org.apache.pig.builtin., org.apache.pig.impl.builtin.]
> >>
> >> And this is the command we are running:
> >>
> >> pig -param inputfile=./bowtie_sorted.bam -param
> >> outputfile=hadoop_bam.pileup -param pparallel=1
> >> ${SEQPIG_HOME}/scripts/pileup.pig
> >>
> >> My google search for this error or "BamUDFLoader" alone did not return
> >> anything useful. Which jar is supposed to provide this function? Any
> >> suggestions will be appreciated.
> >>
> >> Thanks a lot in advance!
> >> -Mehmet
> >>
> >>
> >>
> >>
> >
> >
> > --
> >
> >
> > https://github.com/bearrito
> > @barrettsmash
>
>
--
https://github.com/bearrito
@barrettsmash
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KALLURI, RAJESH K 2013-04-22, 21:18