Brian Derickson 2012-11-01, 22:09
I don't think the output from the reducer should be a Pair. You said
you got an error when you didn't use a Pair here - what was it?
On 1 November 2012 22:09, Brian Derickson <[EMAIL PROTECTED]> wrote:
> I've been pulling my hair out over this all day, and I'm hoping this is
> something simple I'm overlooking.
> The relevant portions of my code, the schema I'm using, and the stack trace
> are at https://gist.github.com/3996847.
> I'm using Hadoop 0.20.2 and Avro 1.7.1 as part of CDH4.
> To briefly describe what I'm doing: the mapper (not included in the gist) is
> taking a bam file and spitting out some information. The key is the
> chromosome and position colon delimited and the value is an integer.
> The reducer is summing up all the integers at a particular position and
> creating a Pair object containing a record using the schema included in my
> gist. The second portion of the pair is an integer that I don't care
> about... if I didn't use a Pair here, I'd get an error. If this is something
> I could do differently, please correct me. :)
> Every time this is run, I get the stack trace included in the gist. I've run
> out of things to try to fix this... I'd really really appreciate any help I
> can get. Thanks!
Brian Derickson 2012-11-02, 15:55
Dave Beech 2012-11-02, 16:06
Brian Derickson 2012-11-02, 16:25
Harsh J 2012-11-02, 17:08