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Accumulo >> mail # user >> PermGen leak in JBoss


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Michael Giordano 2013-04-24, 13:48
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Heath Abelson 2013-04-24, 15:21
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Re: PermGen leak in JBoss
On Wed, Apr 24, 2013 at 11:21 AM, Heath Abelson
<[EMAIL PROTECTED]>wrote:

> Hi, I am a colleague of Michael's, I can provide more info
>
> The following are the 5 threads that are not being cleaned up on an
> undeploy. It's hard to get more stack info than this.
>
> Daemon Thread [FileWatchdog] (Running)
> Daemon Thread [MSC service thread 1-5-SendThread(cbdbtestbox:2181)]
> (Running)
> Daemon Thread [MSC service thread 1-5-EventThread] (Running)
> Daemon Thread [Thrift Connection Pool Checker] (Running)
> Daemon Thread [FileWatchdog] (Running)
>
> Using Plumbr, the report states that the SendThread and EventThread above
> both contain an instance of org.apache.zookeeper.ClientCnxn
>
I tried this on 1.4 and then ran jstack using following program.
public class Test {
  public static void main(String[] args) throws Exception {
    ZooKeeperInstance instance = new ZooKeeperInstance("test14",
"localhost");
    Connector connector = instance.getConnector("root", "secret");

    UtilWaitThread.sleep(600000);

  }
}

I see the following threads after filtering out java threads and the thread
calling main.  I am running this code in a different way.  I used the
accumulo script to execute it, which uses Accumulo start, which introduces
the AccumuloFilesystemAlterationMonitor thread.  I am seeing three of the
threads you see, I am not seeing the FileWatchDog threads.

"Thrift Connection Pool Checker" daemon prio=10 tid=0x00007f861839f800
nid=0x61f0 waiting on condition [0x00007f8652a62000]
   java.lang.Thread.State: TIMED_WAITING (sleeping)
at java.lang.Thread.sleep(Native Method)
at
org.apache.accumulo.core.client.impl.ThriftTransportPool$Closer.run(ThriftTransportPool.java:129)
at java.lang.Thread.run(Thread.java:662)

"Test-EventThread" daemon prio=10 tid=0x00007f8618119000 nid=0x61ee waiting
on condition [0x00007f8652d02000]
   java.lang.Thread.State: WAITING (parking)
at sun.misc.Unsafe.park(Native Method)
- parking to wait for  <0x00000000bb402270> (a
java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
at java.util.concurrent.locks.LockSupport.park(LockSupport.java:156)
at
java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1987)
at
java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:399)
at org.apache.zookeeper.ClientCnxn$EventThread.run(ClientCnxn.java:498)

"Test-SendThread(localhost:2181)" daemon prio=10 tid=0x00007f8618103000
nid=0x61ed runnable [0x00007f8652e03000]
   java.lang.Thread.State: RUNNABLE
at sun.nio.ch.EPollArrayWrapper.epollWait(Native Method)
at sun.nio.ch.EPollArrayWrapper.poll(EPollArrayWrapper.java:210)
at sun.nio.ch.EPollSelectorImpl.doSelect(EPollSelectorImpl.java:65)
at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
- locked <0x00000000bb3e0e88> (a sun.nio.ch.Util$2)
- locked <0x00000000bb3e0e78> (a java.util.Collections$UnmodifiableSet)
- locked <0x00000000bb3e0aa8> (a sun.nio.ch.EPollSelectorImpl)
at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
at org.apache.zookeeper.ClientCnxn$SendThread.run(ClientCnxn.java:1131)

"org.apache.accumulo.start.classloader.AccumuloFilesystemAlterationMonitor"
daemon prio=10 tid=0x00007f86a4387000 nid=0x61e9 waiting on condition
[0x00007f865367c000]
   java.lang.Thread.State: TIMED_WAITING (sleeping)
at java.lang.Thread.sleep(Native Method)
at
org.apache.accumulo.start.classloader.AccumuloFilesystemAlterationMonitor.run(AccumuloFilesystemAlterationMonitor.java:127)
at java.lang.Thread.run(Thread.java:662)
Should probably open a ticket about this issue.  We could probably do
something about the Thrift Connection Pool Checker threads.   I am not sure
if the zookeeper threads are an issue w/ zookeeper or an issue w/ how
accumulo is using zookeeper.
> -Heath
>
> -----Original Message-----
> From: Michael Giordano
> Sent: Wednesday, April 24, 2013 9:48 AM
> To: [EMAIL PROTECTED]
> Subject: PermGen leak in JBoss
>
> Under version 1.3.7 we are using the following code to initialize a
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Michael Giordano 2013-05-03, 15:43
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Keith Turner 2013-05-03, 15:54
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Keith Turner 2013-04-24, 15:44
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Eric Newton 2013-04-24, 15:47
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Heath Abelson 2013-04-24, 16:08
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Keith Turner 2013-04-24, 16:34
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Benson Margulies 2013-04-24, 16:58
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Heath Abelson 2013-04-24, 16:58
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Josh Elser 2013-04-24, 14:12
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Keith Turner 2013-04-24, 14:28
NEW: Monitor These Apps!
elasticsearch, apache solr, apache hbase, hadoop, redis, casssandra, amazon cloudwatch, mysql, memcached, apache kafka, apache zookeeper, apache storm, ubuntu, centOS, red hat, debian, puppet labs, java, senseiDB