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Re: problems with start-all.sh - Hadoop - [mail # user]
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...On May 10, 2011 17:54:27 Keith Thompson wrote: I'd say, for running tests with a pseudo-cluster on a single machine it would be easiest for you to extract the archive somewhere i...
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Author: Luca Pireddu,
2011-05-10, 16:08
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Re: problems with start-all.sh - Hadoop - [mail # user]
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...On May 10, 2011 17:39:12 Keith Thompson wrote: Don't try to run it as root with "sudo". Just run it as your regular user. If you try to run it as a different user then you...
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Author: Luca Pireddu,
2011-05-10, 15:47
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Re: problems with start-all.sh - Hadoop - [mail # user]
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...Hi Keith, On May 10, 2011 17:20:15 Keith Thompson wrote: Try running: bin/start-all.sh Luca Pireddu CRS4 - Distributed Computing Group Loc. Pixina Manna Edificio 1 P...
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Author: Luca Pireddu,
2011-05-10, 15:25
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Announcing Seal 0.1.0: BWA alignment on Hadoop - Hadoop - [mail # user]
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...Hello everyone. If you're working on short DNA read alignment, then you ma y be interested in this message. We've just released Seal (http://biodoop-seal.sourceforge.net/),...
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Author: Luca Pireddu,
2011-05-09, 10:47
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Re: Memory mapped resources - Hadoop - [mail # user]
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...On April 12, 2011 21:50:07 Luke Lu wrote: We adopted this solution for a similar problem. For a program we developed each mapper needed to access (read-only) an index about...
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Author: Luca Pireddu,
2011-04-13, 07:21
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Re: Hadoop for Bioinformatics - Hadoop - [mail # user]
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...On March 28, 2011 04:51:14 Franco Nazareno wrote: I'll add some relevant citations: An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioi...
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Author: Luca Pireddu,
2011-03-29, 13:49
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Re: Hadoop for Bioinformatics - Hadoop - [mail # user]
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...On March 28, 2011 04:51:14 Franco Nazareno wrote: And a good day to you Franco! The short answer is yes! At CRS4 we are working on this very problem. We have ...
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Author: Luca Pireddu,
2011-03-29, 13:39
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Re: how to write outputs sequentially? - Hadoop - [mail # user]
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...On March 22, 2011 16:54:34 Shi Yu wrote: You can look at TeraSort in the examples to see how to do this. There's even a short write-up by Owen O'Malley about it here...
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Author: Luca Pireddu,
2011-03-22, 16:03
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